rs4161875 SNP Detail

Summary

• ID
  rs4161875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11449367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCACTTATC TATATGCACC CCCAGCCCCA GCAGGAACTT TATCAACAAA CATAACTTAG
  ACAACCCTTG GACAAGTGTT GTTAAGGGTT GAAATGGTCT AACCATAAAC TGCCAGACTC
  ATTCAACTCA AGGTTGCATG CCACTGCTGG GTGCACAGTG CCATGGTCTC TGGCAGGAGG
  GAGACTGCCA GGAGCAGGGG CTCAGCATGG GCAGGGCCAC TCCTGAGGCT GATGATGTCC
  TGCTTGCCTT TCCAGGTGGC TGAGATGCAT GGGGAGCTGA TTGAGTTCAA CGAGCGTCTA
  Y
  ACAGGGCCCT GGTGGCCAAG GAAGCCCTGG TGTCCCAAAT GAGGCAGGAG CTGATTGACC
  TCCGAGGACC GGTGAGTGCT CCCCACCAGG AAGCAGGTCT GAGCCCTGCC ACTTCACTCT
  GCTCTCCCTG AGGCTCCACC AGGCTTCTGC TACCCGAGTT AGTTCATTTC TGCCGGTGTC
  AGTGACCGAG GAAGGTACAG GAAGTAGACA AGCACACACC CTTGTTGCAC CTGCAGACTG
  TATCATTAGA GAGTCATGCA GTTGTATGTG CTTGTCATAC AGGCGCATTC CATGTTCCTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss6323894	mCV24667225_9261969	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	C
ss39452702	mCV24667225	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147852361	ENSMUSSNP4845653	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs4161875					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11449367 () rs orientation: forward

Symbol	Name	Function Class
Gm59955	predicted gene, 59955	563 bp downstream
Rr511811	regulatory region 511811	594 bp distal
Snx29	sorting nexin 29	within coordinates
Tssr137107	transcription start site region 137107	578 bp upstream
Tssr140027	transcription start site region 140027	1668 bp downstream