rs4164996 SNP Detail

Summary

• ID
  rs4164996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:15804246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAACTACAG GCTCTTTCCT CATTTCGGGC TGTATACCCC AGGCCACTTT CTCTTGCTTC
  ATAAGTACTT AAGACTCTTA TATTTATACT AATCTCATTT AAATGCATTT TATTAAAAAT
  GGTGGCTATA CATATGTATG TTTCCTGGGT GTCCTATTGC CATATAACAA GGTCTATTTT
  TTCTTATTTT TTTATTTATT CATTTTTAAA AATCAGAGCA AGGAGTTATA TAAACCAGAC
  CTGACTGTGG GGTTTTCAGG CTTTGAGGAA GTTATTTTAC ATAAGGGACC AACTGGCTCT
  Y
  TCAGACTTCC CCCATGGTTA TAAACTTCCA ACACACTGTG GTCAGAGTAA GTGGCTCTTT
  CTCTTTGGGT TTCCTCCTAA CCAGTCCACA TCTTTAAAAA AAGGACATCA CTGCCATATC
  TAAAAGACTT ATTCATTCTT TTACCAAATT TAAACAAAGA AAAGAATAAA ATTTGATTCC
  TACTAATCAA GGAGACTGTG GGTCCTGAAC ACATAGGTTG TTGTATAAAA AGACTGCTAA
  GCAAGCCTAC AGGAACAAGC CAATAAGCAC TTCTCCTTCA TTGCCTCTGC TTCAGTTCCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6327036	mCV25140784_13557685	CRAMUS	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss39463211	mCV25140784	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4164996					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:15804246 () rs orientation: forward

Symbol	Name	Function Class
Rr404696	regulatory region 404696	1438 bp downstream
Spidr	scaffolding protein involved in DNA repair	within coordinates
Tssr137231	transcription start site region 137231	1870 bp downstream