rs4165061 SNP Detail

Summary

• ID
  rs4165061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:17160364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTGTATC CATAAAATTG
  GCTCCCTTCT TCTCCAACTA GAACTCGAGA GGTACTTCTG CCAAAGTTTA AGCTTGAGAA
  GAATTACAAC CTGGTGGAGG TCCTTAAGTC CATGGGAATC ACAAAGCTCT TCAACAAGAA
  TGGCAATATG TCAGGCATCT CAGACCAGAG GATCGCCATT GACCTGGTAT GGCTCTCTCT
  Y
  CTGTGCTAGC CCCCACACTT TGCCTTGCAC TGGTGCTATC TCTTTCCCCA ACCTGCTGGG
  CCTATGATCC AGACTTTAAG GATACAGGGG GCTGGGTGGC TATTTTGGCT CCCATGGCCT
  CTCAGACTAT GGCCATGGCC AAAAGTTAAT GTAGCTGTAA TGTGCAAAGG TAAGAATGTG
  TATGTAACAC ACTCTAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6327103	mCV23262101_14915455	CRAMUS	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss39470081	mCV23262101	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss48151473	NES12127886	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss147879827	ENSMUSSNP5108222	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4165061					SNP	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48151473	NES12127886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:17160364 () rs orientation: forward

Symbol	Name	Function Class
Gm24927	predicted gene, 24927	488 bp upstream
Pi4ka	phosphatidylinositol 4-kinase alpha	within coordinates
Serpind1	serine (or cysteine) peptidase inhibitor, clade D, member 1	within coordinates