rs4165222 SNP Detail

Summary

• ID
  rs4165222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20510301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCGAAA ACTAAAAAAA
  AAGAAAAAAA AAAAAAAGAC AAGCACCTCA GGGAAACTGC TGTGATGGCT AAAGGTTCCT
  GGGGGATTCA CCAGGAAGAT GGGATGGTAA GAGAAGTGGG CAGAGTGGAG CATTCTAGAG
  GCCAGAGAGG GTATGAGTAT GTGGCAAAGA GGCTGCCAAA GTTTGTCTCG AATCTGTCTG
  Y
  CATGGACTCA GTGCTGGACC TAGAGTTGAA CCTAACTTCC AACTATTTAT TTCTTTAGTC
  AGTCTTTTGT GATGCAATCT TAAGTAGTCT GGGCTGGCCT CAAACTAGTT AGGTAGTTTA
  GGCTTACCTT AACTTTGATC CTCTTGCACT CTATATTCCA AGTAATGGGA TTCCAGTAAC
  GGGCCTAACA TTTTCCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6327266	mCV24581660_18256923	CRAMUS	CRAMUS_MOUSE	f	SNP		T	C					T
ss39415974	mCV24581660	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss52599453	NES15692414	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	T		C	T	T	C		C
ss147885664	ENSMUSSNP4247121	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss325109644	CHEV_16_20691624	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4165222					SNP	T	T	C	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52599453	NES15692414	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20510301 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	1549 bp proximal
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	within coordinates
Fam131a	family with sequence similarity 131, member A	1690 bp upstream
Rr325071	regulatory region 325071	1299 bp proximal
Tssr137486	transcription start site region 137486	254 bp upstream
Tssr137487	transcription start site region 137487	1712 bp upstream
Tssr137488	transcription start site region 137488	1776 bp upstream