rs4168071 SNP Detail

Summary

• ID
  rs4168071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAGT AAAAACAAAT AAACTTTCAC
  R
  TTAGCCTCAA ACCCTCTATA ATTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6330135	mCV22368106_27893677	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G	A	A
ss39459439	mCV22368106	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A	A
ss147925802	ENSMUSSNP2158812	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4168071					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206163 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	within coordinates
Cpgi8159	CpG island 8159	461 bp proximal
Gm61087	predicted gene, 61087	1498 bp upstream
Gm61089	predicted gene, 61089	1640 bp downstream
Rr370076	regulatory region 370076	1958 bp upstream
Rr514223	regulatory region 514223	within coordinates
Rr514224	regulatory region 514224	1175 bp proximal
Rr514225	regulatory region 514225	1532 bp proximal
Rr514226	regulatory region 514226	1545 bp proximal
Tssr140714	transcription start site region 140714	1345 bp downstream
Tssr140715	transcription start site region 140715	1423 bp downstream
Tssr140716	transcription start site region 140716	1461 bp downstream
Tssr140717	transcription start site region 140717	1967 bp downstream