rs4168073 SNP Detail

Summary

• ID
  rs4168073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA TTCATTTTGC ACTAATACAA
  R
  CCACTAAATA TAGCTCTAAA ACATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6330137	mCV22368112_27893878	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A		G
ss39461611	mCV22368112	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147925813	ENSMUSSNP1767567	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss325129934	CHEV_16_30387632	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4168073					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206364 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp13a3	ATPase type 13A3			Intron
				Noncoding-Transcript-Variant
Cpgi8159	CpG island 8159			260 bp proximal
Gm61087	predicted gene, 61087			1297 bp upstream
Gm61089	predicted gene, 61089			1439 bp downstream
Rr370076	regulatory region 370076			1757 bp upstream
Rr514223	regulatory region 514223			within coordinates
Rr514224	regulatory region 514224			974 bp proximal
Rr514225	regulatory region 514225			1331 bp proximal
Rr514226	regulatory region 514226			1344 bp proximal
Tssr140714	transcription start site region 140714			1144 bp downstream
Tssr140715	transcription start site region 140715			1222 bp downstream
Tssr140716	transcription start site region 140716			1260 bp downstream
Tssr140717	transcription start site region 140717			1766 bp downstream