rs4168074 SNP Detail

Summary

• ID
  rs4168074
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC CAAACAGTTA CTGTCAGTCG
  M
  CAAATGCTAC TCCTTCCTCC ACTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6330138	mCV22368113_27894063	CRAMUS	CRAMUS_MOUSE	f	SNP	C	A	C	A	A
ss39465697	mCV22368113	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	A	A
ss147925817	ENSMUSSNP2892118	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		A
ss325129935	CHEV_16_30387817	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4168074					SNP	C	A	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206549 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	within coordinates
Cpgi8159	CpG island 8159	75 bp proximal
Gm61087	predicted gene, 61087	1112 bp upstream
Gm61089	predicted gene, 61089	1254 bp downstream
Rr370076	regulatory region 370076	1572 bp upstream
Rr514223	regulatory region 514223	within coordinates
Rr514224	regulatory region 514224	789 bp proximal
Rr514225	regulatory region 514225	1146 bp proximal
Rr514226	regulatory region 514226	1159 bp proximal
Rr514227	regulatory region 514227	1967 bp proximal
Tssr140714	transcription start site region 140714	959 bp downstream
Tssr140715	transcription start site region 140715	1037 bp downstream
Tssr140716	transcription start site region 140716	1075 bp downstream
Tssr140717	transcription start site region 140717	1581 bp downstream