rs4168075 SNP Detail

Summary

• ID
  rs4168075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA CTGTCAGTCG ACAAATGCTA
  Y
  TCCTTCCTCC ACTCCCAACT CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6330139	mCV22368114_27894073	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T	C	C
ss39468126	mCV22368114	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C	C
ss147925823	ENSMUSSNP6841168	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
ss325129936	CHEV_16_30387827	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4168075					SNP	T	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206559 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	within coordinates
Cpgi8159	CpG island 8159	65 bp proximal
Gm61087	predicted gene, 61087	1102 bp upstream
Gm61089	predicted gene, 61089	1244 bp downstream
Rr370076	regulatory region 370076	1562 bp upstream
Rr514223	regulatory region 514223	within coordinates
Rr514224	regulatory region 514224	779 bp proximal
Rr514225	regulatory region 514225	1136 bp proximal
Rr514226	regulatory region 514226	1149 bp proximal
Rr514227	regulatory region 514227	1957 bp proximal
Tssr140714	transcription start site region 140714	949 bp downstream
Tssr140715	transcription start site region 140715	1027 bp downstream
Tssr140716	transcription start site region 140716	1065 bp downstream
Tssr140717	transcription start site region 140717	1571 bp downstream