rs4168076 SNP Detail

Summary

• ID
  rs4168076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT CGACAAATGC TACTCCTTCC
  Y
  CCACTCCCAA CTCCACACCC CACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6330140	mCV22368473_27894081	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C	T	T
ss39478422	mCV22368473	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T	T
ss147925827	ENSMUSSNP381579	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		T
ss325129937	CHEV_16_30387835	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4168076					SNP	C	T	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206567 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	within coordinates
Cpgi8159	CpG island 8159	57 bp proximal
Gm61087	predicted gene, 61087	1094 bp upstream
Gm61089	predicted gene, 61089	1236 bp downstream
Rr370076	regulatory region 370076	1554 bp upstream
Rr514223	regulatory region 514223	within coordinates
Rr514224	regulatory region 514224	771 bp proximal
Rr514225	regulatory region 514225	1128 bp proximal
Rr514226	regulatory region 514226	1141 bp proximal
Rr514227	regulatory region 514227	1949 bp proximal
Tssr140714	transcription start site region 140714	941 bp downstream
Tssr140715	transcription start site region 140715	1019 bp downstream
Tssr140716	transcription start site region 140716	1057 bp downstream
Tssr140717	transcription start site region 140717	1563 bp downstream