rs4168078 SNP Detail

Summary

• ID
  rs4168078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30207922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAA GTGCAGGCTT GTCTAGGGTG
  R
  CAATCATAAA GGACGCCTGT GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6330142	mCV22760107_27895426	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G
ss39453994	mCV22760107	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147925847	ENSMUSSNP4393233	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss325129941	CHEV_16_30389190	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4168078					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30207922 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	248 bp upstream
Cpgi8159	CpG island 8159	within coordinates
Gm61087	predicted gene, 61087	within coordinates
Gm61089	predicted gene, 61089	within coordinates
Rr370076	regulatory region 370076	199 bp upstream
Rr514223	regulatory region 514223	585 bp distal
Rr514224	regulatory region 514224	215 bp distal
Rr514225	regulatory region 514225	206 bp distal
Rr514226	regulatory region 514226	within coordinates
Rr514227	regulatory region 514227	594 bp proximal
Tssr140714	transcription start site region 140714	403 bp upstream
Tssr140715	transcription start site region 140715	302 bp upstream
Tssr140716	transcription start site region 140716	246 bp upstream
Tssr140717	transcription start site region 140717	208 bp downstream