rs4168079 SNP Detail

Summary

• ID
  rs4168079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30208678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT GACGATGAGC CACAGCTGTG
  R
  CTTCCCAGCT CCTGCTCCCC ATTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6330143	mCV22760106_27896182	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss39424317	mCV22760106	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147925852	ENSMUSSNP29802	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss325129943	CHEV_16_30389946	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4168079					SNP	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30208678 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	1004 bp upstream
Cpgi8159	CpG island 8159	333 bp distal
Gm61087	predicted gene, 61087	within coordinates
Gm61089	predicted gene, 61089	152 bp upstream
Rr370076	regulatory region 370076	330 bp downstream
Rr514223	regulatory region 514223	1341 bp distal
Rr514224	regulatory region 514224	971 bp distal
Rr514225	regulatory region 514225	962 bp distal
Rr514226	regulatory region 514226	163 bp distal
Rr514227	regulatory region 514227	within coordinates
Tssr140714	transcription start site region 140714	1159 bp upstream
Tssr140715	transcription start site region 140715	1058 bp upstream
Tssr140716	transcription start site region 140716	1002 bp upstream
Tssr140717	transcription start site region 140717	512 bp upstream