rs4168080 SNP Detail

Summary

• ID
  rs4168080
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:30208810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA AAACCCTGCA CACACTCCTG
  M
  CAGCTTCCTT AGCAGTTGGT TATTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6330144	mCV22760105_27896314	CRAMUS	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss39464084	mCV22760105	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
ss147925857	ENSMUSSNP5457903	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
ss325129944	CHEV_16_30390078	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4168080					SNP	A	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30208810 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	Intron
Cpgi8159	CpG island 8159	465 bp distal
Gm61087	predicted gene, 61087	within coordinates
Gm61089	predicted gene, 61089	284 bp upstream
Rr370076	regulatory region 370076	462 bp downstream
Rr514223	regulatory region 514223	1473 bp distal
Rr514224	regulatory region 514224	1103 bp distal
Rr514225	regulatory region 514225	1094 bp distal
Rr514226	regulatory region 514226	295 bp distal
Rr514227	regulatory region 514227	within coordinates
Tssr140714	transcription start site region 140714	1291 bp upstream
Tssr140715	transcription start site region 140715	1190 bp upstream
Tssr140716	transcription start site region 140716	1134 bp upstream
Tssr140717	transcription start site region 140717	644 bp upstream