rs4168081 SNP Detail

Summary

• ID
  rs4168081
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30209050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA CACACACACA CACACACACA
  S
  AGAGAGAGAG AGAGAGAGAG AGAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss6330145	mCV22759921_27896554	CRAMUS	CRAMUS_MOUSE	f	SNP	G	C	C
ss8602946	WI_WGS_16_30170267	WI	MOUSE	f	SNP	G	C
ss39416523	mCV22759921	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss147925863	ENSMUSSNP6770261	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs4168081					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30209050 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	1376 bp upstream
Cpgi8159	CpG island 8159	705 bp distal
Gm61087	predicted gene, 61087	146 bp downstream
Gm61089	predicted gene, 61089	524 bp upstream
Rr370076	regulatory region 370076	702 bp downstream
Rr514223	regulatory region 514223	1713 bp distal
Rr514224	regulatory region 514224	1343 bp distal
Rr514225	regulatory region 514225	1334 bp distal
Rr514226	regulatory region 514226	535 bp distal
Rr514227	regulatory region 514227	34 bp distal
Tssr140714	transcription start site region 140714	1531 bp upstream
Tssr140715	transcription start site region 140715	1430 bp upstream
Tssr140716	transcription start site region 140716	1374 bp upstream
Tssr140717	transcription start site region 140717	884 bp upstream