rs4168093 SNP Detail

Summary

• ID
  rs4168093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72775951 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTTG CTAGAGTATC CACTGCCACT
  Y
  CCCGAAAGGA CATGGGCCAG CTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss6330157	mCV24587912_27906288	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T
ss39426508	mCV24587912	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss144619234	ENSMUSSNP4892235	ENSEMBL	ENSEMBL_Sanger	r	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs4168093					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72775951 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	within coordinates
Gm20554	predicted gene, 20554	within coordinates
Irx2	Iroquois homeobox 2	988 bp upstream
Rr273617	regulatory region 273617	151 bp distal
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	954 bp upstream
Tssr120306	transcription start site region 120306	970 bp upstream
Tssr120307	transcription start site region 120307	999 bp upstream
Tssr123170	transcription start site region 123170	653 bp downstream
Tssr123171	transcription start site region 123171	731 bp downstream
Tssr123172	transcription start site region 123172	758 bp downstream