rs4168557 SNP Detail

Summary

• ID
  rs4168557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30752118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATTAAG CCTCCCACCA
  CCCCCTTGGG TTAAGCAGCA ATTTCATTTT TTATGATGGA GATGGAGAAT TAAAATGACT
  TCTTGGCTTC CTGCTATGTA CGAGGAAACC TTGTTGCCCC AGATTTGCGG GATCCCGGTA
  GAGTAAACAA AGGATTCTCC TTTAGCTCCA AGATGGCCAC TCTCATTCCC CACACTCACC
  Y
  AACAGCTCTG CACTGGATTC AAAGACCACG CTCAGGACAT CATGAAGAAC AATGGCAGCC
  ACTGCCTCTT TCAACTGATG AGGAGTTGGA TGACCAGAGA AGGGAAGCGA TCTGCCCGGG
  GTCAGTCAGC ATCACAGCTA GAGACCCACA GCCTTCCTTC TAGAGCCTGC CCATCAGGAC
  CTTACGGTGA TGGGCGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss6330627	mCV24614669_28446937	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss39477553	mCV24614669	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147930737	ENSMUSSNP1874429	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	T
ss325132327	CHEV_16_30933386	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs4168557					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30752118 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	1704 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Rr514366	regulatory region 514366	103 bp proximal
Rr514367	regulatory region 514367	1275 bp proximal
Tssr140722	transcription start site region 140722	110 bp downstream
Tssr140723	transcription start site region 140723	197 bp downstream