rs4168558 SNP Detail

Summary

• ID
  rs4168558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30752143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTTAAG CAGCAATTTC
  ATTTTTTATG ATGGAGATGG AGAATTAAAA TGACTTCTTG GCTTCCTGCT ATGTACGAGG
  AAACCTTGTT GCCCCAGATT TGCGGGATCC CGGTAGAGTA AACAAAGGAT TCTCCTTTAG
  CTCCAAGATG GCCACTCTCA TTCCCCACAC TCACCTAACA GCTCTGCACT GGATTCAAAG
  R
  CCACGCTCAG GACATCATGA AGAACAATGG CAGCCACTGC CTCTTTCAAC TGATGAGGAG
  TTGGATGACC AGAGAAGGGA AGCGATCTGC CCGGGGTCAG TCAGCATCAC AGCTAGAGAC
  CCACAGCCTT CCTTCTAGAG CCTGCCCATC AGGACCTTAC GGTGATGGGC GTATGACTGG
  TCTCATGTGC TCACCAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss6330628	mCV24614679_28446962	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	A					A
ss39437335	mCV24614679	ABI	CRAMUS_MOUSE	f	SNP	G	A	A					A
ss48173320	NES12101383	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A	A	A	A		G	A	A	G
ss147930742	ENSMUSSNP6560116	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325132328	CHEV_16_30933411	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs4168558					SNP	G	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48173320	NES12101383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30752143 () rs orientation: forward

Symbol	Name	Function Class
C330004M20Rik	RIKEN cDNA C330004M20 gene	1679 bp downstream
Gm46565	predicted gene, 46565	within coordinates
Rr514366	regulatory region 514366	78 bp proximal
Rr514367	regulatory region 514367	1250 bp proximal
Tssr140722	transcription start site region 140722	85 bp downstream
Tssr140723	transcription start site region 140723	172 bp downstream