rs4169041 SNP Detail

Summary

• ID
  rs4169041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31240566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATG AAATAAAAAA AAATCAATAA
  R
  TTAAAAAAAG AAACAGAAGG AAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331112	mCV25149387_28927990	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss39430344	mCV25149387	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss147937332	ENSMUSSNP698005	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss325134037	CHEV_16_31421834	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169041					SNP	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31240566 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	549 bp upstream
Rr514473	regulatory region 514473	1933 bp distal
Rr514474	regulatory region 514474	322 bp proximal
Rr514475	regulatory region 514475	543 bp proximal
Tssr137893	transcription start site region 137893	520 bp upstream
Tssr137894	transcription start site region 137894	540 bp upstream
Tssr137895	transcription start site region 137895	567 bp upstream
Tssr140755	transcription start site region 140755	370 bp upstream