rs4169042 SNP Detail

Summary

• ID
  rs4169042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31240826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT GGATCACTAA TGTAACCCAG
  Y
  TCCATTTTCC ACTGTGTTTA ATCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331113	mCV25149388_28928250	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss39453128	mCV25149388	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss147937338	ENSMUSSNP1987099	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss325134038	CHEV_16_31422094	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169042					SNP	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31240826 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	289 bp upstream
Rr514474	regulatory region 514474	62 bp proximal
Rr514475	regulatory region 514475	283 bp proximal
Tssr137893	transcription start site region 137893	260 bp upstream
Tssr137894	transcription start site region 137894	280 bp upstream
Tssr137895	transcription start site region 137895	307 bp upstream
Tssr140755	transcription start site region 140755	630 bp upstream