rs4169745 SNP Detail

Summary

• ID
  rs4169745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31757395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA TTCTTGGACT TCCTATTCAC
  R
  GCTGCCCATT GTTGGGTTAG TTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331822	mCV24785863_29432450	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A
ss39421169	mCV24785863	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147943478	ENSMUSSNP6752603	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss325135615	CHEV_16_31938663	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169745					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31757395 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317639	regulatory region 317639	1595 bp distal
Rr317640	regulatory region 317640	595 bp distal
Rr323364	regulatory region 323364	1679 bp distal
Rr326503	regulatory region 326503	1958 bp proximal