rs4169746 SNP Detail

Summary

• ID
  rs4169746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31758278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATGTCC TCCAGTTGGA
  TGTCTTCTGT TCCTGAAGGA CCCAGGTTGT TCTTACAATA GCGCCAAGAG CCCTGTGATA
  TTAACTGTTA CTGTGAACTT GGCATTTATT TTCCCCGAGA TGTGACTCGG GTATATAGTT
  CCCCCATGCC ATAGACTCCA ACTCTCTCTT TATTTCGGTT CCCATCCCTT ACAAATATGG
  R
  TTCCAGAGTG TGGGCAAGTT GTAGCTGGGT CTGGTGGTAG CAATTAGGAG CCTGAGGCAG
  GAGGATTGTT CTGAGTGCAA GGCCAGCCAA GGTTGTAGAA TGAGGCTTTC GGGGAGAGGA
  GTCAGTATTA AAGCACTTGC CTTGCATGTG CAAGGTCCTG GGTTCAATCT CCATCACTAA
  CGTGGCCTGC CCCTCCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6331823	mCV24785873_29433333	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss39424399	mCV24785873	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss147943484	ENSMUSSNP4863665	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4169746					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31758278 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317640	regulatory region 317640	1478 bp distal
Rr326503	regulatory region 326503	1075 bp proximal
Tssr137933	transcription start site region 137933	1365 bp upstream