rs4169747 SNP Detail

Summary

• ID
  rs4169747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31758438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGATTGT TCTGAGTGCA AGGCCAGCCA AGGTTGTAGA
  ATGAGGCTTT CGGGGAGAGG AGTCAGTATT AAAGCACTTG CCTTGCATGT GCAAGGTCCT
  K
  GGTTCAATCT CCATCACTAA CGTGGCCTGC CCCTCCCCCA CCCCCTACCC CCCCACCCCC
  GAAAACAGCA TGACAGCTCA AGCCTGAAGC TGAAGCACT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331824	mCV24785874_29433493	CRAMUS	CRAMUS_MOUSE	f	SNP	T	G	G	T
ss39446232	mCV24785874	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
ss147943488	ENSMUSSNP822803	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		T
ss325135617	CHEV_16_31939706	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169747					SNP	T	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31758438 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317640	regulatory region 317640	1638 bp distal
Rr326503	regulatory region 326503	915 bp proximal
Tssr137933	transcription start site region 137933	1205 bp upstream