rs4169749 SNP Detail

Summary

• ID
  rs4169749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31759330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGG ACTATAGATA CAGAGATACC
  K
  CCTCCTGAAT TCCCTTTAAT CCCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss6331826	mCV24785885_29434367	CRAMUS	CRAMUS_MOUSE	f	SNP		T					T		G
ss39416810	mCV24785885	ABI	CRAMUS_MOUSE	f	SNP		T					T		G
ss48178759	NES12114454	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	G		G	G	T	G		T	T	G
ss325135619	CHEV_16_31940598	CHEVERUD	SCREENING_POP	f	SNP												T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs4169749					SNP	T	T	G	T	G	G	T	G	G	T	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48178759	NES12114454	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31759330 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr326503	regulatory region 326503	23 bp proximal
Tssr137933	transcription start site region 137933	313 bp upstream
Tssr137934	transcription start site region 137934	1980 bp upstream