rs4169750 SNP Detail

Summary

• ID
  rs4169750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31760460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTATTATTT TATGTGAATG AATGTTTTGC CTGCATGGGT GGTACCATGT GTGTGCCTGG
  TGCTGGAGGG AGTCAGAAGA GGTTGTTGGA TGCTCCGTGA CTGGGGTTAC AGGTGGTTGT
  AAGCTGCCTG TGAATGCTGG GACTCTGACC TTGGTCCTTT AAAAGAACAA GCGCACCTAC
  CCACCCCTAA CATTCATTTT AACTGTAGGT TCTCCTGATC TTTCTGTTTG TCTGAGTGCT
  GGGATTACTG GGTACACGAC TATGTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  Y
  CTTCTTCTCC TCCTCTTCCT CCTCCTCCCT CCTCTTTTTC TTTCTTCCTT CTTCCTCCTC
  TTCCTCTTCC TTTTTTTGTA TCCTAGGGTG GGCTAGAACT TGAAATCTTT CTGCATCACT
  CAGGTGTTGG TGTTTCAGAT GTGTACCAAT CACATCTTAT CATTACCATT TTTATGTTGA
  GTGTCTTCAG ACAGGTTGCA GTATAGTCTG TGTTATAATA ACTGACAAAT GTCACTCCCA
  GCAGATGTAG ATCTTTGGAC TGGCACCCGT GAGAACTGTG ACAGACTTTC CAGTCCTGTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss6331827	mCV24785886_29435497	CRAMUS	CRAMUS_MOUSE	f	SNP	T	T	C
ss39456589	mCV24785886	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs4169750					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31760460 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317641	regulatory region 317641	941 bp proximal
Rr326503	regulatory region 326503	660 bp distal
Tssr137933	transcription start site region 137933	793 bp downstream
Tssr137934	transcription start site region 137934	850 bp upstream