rs4169782 SNP Detail

Summary

• ID
  rs4169782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31801173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTA AGAGCACTGA CTGCTCTTCC
  R
  GAGGTCCTGA GTTCAATTCC CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss6331860	mCV25100927_29476345	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G
ss39440425	mCV25100927	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147943808	ENSMUSSNP5726996	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss325135663	CHEV_16_31982441	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs4169782					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31801173 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	1748 bp proximal
Gm55238	predicted gene, 55238	121 bp downstream
Rr514590	regulatory region 514590	1527 bp distal
Rr514591	regulatory region 514591	1139 bp distal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates