rs4169783 SNP Detail

Summary

• ID
  rs4169783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31801251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGAGCACT GACTGCTCTT CCAGAGGTCC TGAGTTCAAT
  TCCCAGGAAC CACATGGTGG CTCACAACCA TCTGATGCCC TCTTCAGGCA AGTGGCACAG
  Y
  ACTCATACAT TAAATAAAAT TTTTAAAAAA CACAAACAAG TAAGGAAGAG GGCTGGAGAG
  ATGGTGCAGC GGTTAAGAGC ATTGACTACT CTTCCAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331861	mCV25100938_29476423	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss39456741	mCV25100938	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss147943812	ENSMUSSNP6099661	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss325135664	CHEV_16_31982519	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169783					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31801251 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	1670 bp proximal
Gm55238	predicted gene, 55238	199 bp downstream
Rr514590	regulatory region 514590	1605 bp distal
Rr514591	regulatory region 514591	1217 bp distal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates