rs4169784 SNP Detail

Summary

• ID
  rs4169784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31801640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGTATT CATACATAAA
  AATAAATAAA CAAACAAATC TTTAAAAAAA AAAAAAGGAA GGAAGAAAAA TGGGCGTTGT
  GGGTTTTTTT AAATCAAAAA TGGATTTTTT TTTCAGGTTC TCCCCACCTC CACCCCAAGA
  CAGGGTTTCT CTGTGTAGCC CTGGCTGTCC TGGAACTCAC TCTGTAGACC AGGCTGGCCT
  Y
  GAACTCAGAA ATCCGCCTAC CTCTGCCTCC CAAGTGCTGG GATTAAAGGC GTGTGCCACC
  ACTGCCCAGC TAAAAATGGA TTTTGTTGTT GGTTTTTCTT CTTCTTCCTT GAAACAGGGT
  CTCATGTAGC CCATGCTGGC TGGCCTCAAA CTTGCTATGT AGCCAAGAAT CCTCCTGCCT
  CTACCTCCCA AAGTGCTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss6331862	mCV25100940_29476811	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T	C
ss39472863	mCV25100940	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147943818	ENSMUSSNP1959044	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325135665	CHEV_16_31982908	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs4169784					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31801640 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	1281 bp proximal
Gm55238	predicted gene, 55238	588 bp downstream
Rr514590	regulatory region 514590	1994 bp distal
Rr514591	regulatory region 514591	1606 bp distal
Rr514592	regulatory region 514592	1738 bp proximal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates