rs4169786 SNP Detail

Summary

• ID
  rs4169786
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31801665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACAAAC AAATCTTTAA
  AAAAAAAAAA AGGAAGGAAG AAAAATGGGC GTTGTGGGTT TTTTTAAATC AAAAATGGAT
  TTTTTTTTCA GGTTCTCCCC ACCTCCACCC CAAGACAGGG TTTCTCTGTG TAGCCCTGGC
  TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCCTTGAAC TCAGAAATCC GCCTACCTCT
  K
  CCTCCCAAGT GCTGGGATTA AAGGCGTGTG CCACCACTGC CCAGCTAAAA ATGGATTTTG
  TTGTTGGTTT TTCTTCTTCT TCCTTGAAAC AGGGTCTCAT GTAGCCCATG CTGGCTGGCC
  TCAAACTTGC TATGTAGCCA AGAATCCTCC TGCCTCTACC TCCCAAAGTG CTAGGATAAA
  AGGTGATATG CAACCGCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331864	mCV25100951_29476836	CRAMUS	CRAMUS_MOUSE	f	SNP	T	G	G	T
ss39425632	mCV25100951	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
ss147943828	ENSMUSSNP5644327	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
ss325135667	CHEV_16_31982933	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169786					SNP	T	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31801665 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	1256 bp proximal
Gm55238	predicted gene, 55238	613 bp downstream
Rr514591	regulatory region 514591	1631 bp distal
Rr514592	regulatory region 514592	1713 bp proximal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates