rs4169787 SNP Detail

Summary

• ID
  rs4169787
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31802026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATCCAACC CATTTAATCT AATAATTACA AATTATCAAA
  TAATTACATA CTGTTTAAAA GCAAAACAAA CAAAAGAACA AAGACCACAG AAAACCTAAC
  M
  ACCACCTTAT TTTGAATAAC ACAAGGATGC TCACAAAGAG AAAGCCTGCA CCTACCTTGT
  CTGGGACTGC ATCCATTATC AGCTCGCCAT ACATATTAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331865	mCV25100952_29477197	CRAMUS	CRAMUS_MOUSE	f	SNP	A	C	C	A
ss39451467	mCV25100952	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
ss147943833	ENSMUSSNP3715190	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		A
ss325135668	CHEV_16_31983294	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169787					SNP	A	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31802026 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	895 bp proximal
Gm55238	predicted gene, 55238	974 bp downstream
Rr514591	regulatory region 514591	1992 bp distal
Rr514592	regulatory region 514592	1352 bp proximal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates