rs4169788 SNP Detail

Summary

• ID
  rs4169788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31802485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTG AAAGAAAAAG TTAAAATGAA
  R
  TGCACTTTAT TCGATGTATA ATTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6331866	mCV25100962_29477656	CRAMUS	CRAMUS_MOUSE	f	SNP		G					G		A
ss39444267	mCV25100962	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss48178849	NES12112831	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A		A	A	G	A		A	G	A	A		A
ss147943838	ENSMUSSNP3899289	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss325135669	CHEV_16_31983753	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4169788					SNP	G	G	A	G	A	A	G	A	A	G	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48178849	NES12112831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31802485 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	436 bp proximal
Gm55238	predicted gene, 55238	1433 bp downstream
Rr514592	regulatory region 514592	893 bp proximal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates