rs4169789 SNP Detail

Summary

• ID
  rs4169789
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31803440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGTGGGACC TTGAAGAAGA AACTTCTCAA GGACTCCTAA AAAGCCAAGC ACAGTTATAA
  ACTCCCGTGC TTCTAGCTAC TGGAGAGGCT AAGGCCAAGG GTCACTTGGG TAAAGGAATT
  CCGGTCTAGC CAGGTGTGGT TTAAGAATAG CTCCTGGGGC TGGCAAGATG GCTCGGGTAA
  GGTTCTGAGT TCAATTCCCA GCAACCACAT GGTGGCTCAC AACCATCTGT GATGAGATCT
  GATGCCCTCT TCTGGTGTAT CTCAAGATAG CTACTCTATA CTTACATATA ATAAATAAAT
  M
  TTTAAAAAAA AAAAAAAGGA ATAGCTCCTA TAAGCTCTTT GTTGGAGGAC GTGTGTCACT
  ATGGGTAGGG TCGGAGGTTT CAAAAGCCCA CTCCAAGCAG TGCCTCTGCC TGCAGCCTTC
  AGATGGGATA TAGAGCTCTC AGCTCCTTTC CAGCACCATG TCTGTCTGCA TGCCACCTTG
  CTCCCTGTAA TGATGATAAT GGACTAAACC TGTATGCCAG CCACAGTTAC GTACTTCTTT
  TATAAGAGTT ATCTTGGGGG CTGGCAAGGT GGCTCAGTGG GTAAGAGAAC TGACTGCTCT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6331867	mCV25100963_29478607	CRAMUS	CRAMUS_MOUSE	f	SNP	A	C	C
ss39472287	mCV25100963	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4169789					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31803440 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	408 bp distal
Rr514592	regulatory region 514592	41 bp distal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates