rs4169790 SNP Detail

Summary

• ID
  rs4169790
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31803441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGTGGGACCT TGAAGAAGAA ACTTCTCAAG GACTCCTAAA AAGCCAAGCA CAGTTATAAA
  CTCCCGTGCT TCTAGCTACT GGAGAGGCTA AGGCCAAGGG TCACTTGGGT AAAGGAATTC
  CGGTCTAGCC AGGTGTGGTT TAAGAATAGC TCCTGGGGCT GGCAAGATGG CTCGGGTAAG
  GTTCTGAGTT CAATTCCCAG CAACCACATG GTGGCTCACA ACCATCTGTG ATGAGATCTG
  ATGCCCTCTT CTGGTGTATC TCAAGATAGC TACTCTATAC TTACATATAA TAAATAAATC
  W
  TTAAAAAAAA AAAAAAGGAA TAGCTCCTAT AAGCTCTTTG TTGGAGGACG TGTGTCACTA
  TGGGTAGGGT CGGAGGTTTC AAAAGCCCAC TCCAAGCAGT GCCTCTGCCT GCAGCCTTCA
  GATGGGATAT AGAGCTCTCA GCTCCTTTCC AGCACCATGT CTGTCTGCAT GCCACCTTGC
  TCCCTGTAAT GATGATAATG GACTAAACCT GTATGCCAGC CACAGTTACG TACTTCTTTT
  ATAAGAGTTA TCTTGGGGGC TGGCAAGGTG GCTCAGTGGG TAAGAGAACT GACTGCTCTT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6331868	mCV25100964_29478608	CRAMUS	CRAMUS_MOUSE	f	SNP	A	T	T
ss39469568	mCV25100964	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4169790					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31803441 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	409 bp distal
Rr514592	regulatory region 514592	42 bp distal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates