rs4169791 SNP Detail

Summary

• ID
  rs4169791
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:31803443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGGACCTTG AAGAAGAAAC TTCTCAAGGA CTCCTAAAAA GCCAAGCACA GTTATAAACT
  CCCGTGCTTC TAGCTACTGG AGAGGCTAAG GCCAAGGGTC ACTTGGGTAA AGGAATTCCG
  GTCTAGCCAG GTGTGGTTTA AGAATAGCTC CTGGGGCTGG CAAGATGGCT CGGGTAAGGT
  TCTGAGTTCA ATTCCCAGCA ACCACATGGT GGCTCACAAC CATCTGTGAT GAGATCTGAT
  GCCCTCTTCT GGTGTATCTC AAGATAGCTA CTCTATACTT ACATATAATA AATAAATCTT
  W
  AAAAAAAAAA AAAAGGAATA GCTCCTATAA GCTCTTTGTT GGAGGACGTG TGTCACTATG
  GGTAGGGTCG GAGGTTTCAA AAGCCCACTC CAAGCAGTGC CTCTGCCTGC AGCCTTCAGA
  TGGGATATAG AGCTCTCAGC TCCTTTCCAG CACCATGTCT GTCTGCATGC CACCTTGCTC
  CCTGTAATGA TGATAATGGA CTAAACCTGT ATGCCAGCCA CAGTTACGTA CTTCTTTTAT
  AAGAGTTATC TTGGGGGCTG GCAAGGTGGC TCAGTGGGTA AGAGAACTGA CTGCTCTTCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6331869	mCV25100974_29478610	CRAMUS	CRAMUS_MOUSE	f	SNP	A	T	T
ss39477362	mCV25100974	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4169791					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31803443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103			411 bp distal
Rr514592	regulatory region 514592			44 bp distal
Senp5	SUMO/sentrin specific peptidase 5			Intron
				Noncoding-Transcript-Variant