rs4169792 SNP Detail

Summary

• ID
  rs4169792
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31804174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACATAA AATAAATAAA
  TAAATACATC TTTAAAAGAA AAATAAAATC AGCAAGAGTT CTTAATAGAT CTTTCCTGAT
  TTGTATCTTT AAAAAAGAGT TACTTTGGTC ATGCTGTCAC TTCACACCAA TAGAACAGTG
  ACTAAGACAC AAGGGGGAAC AGCAAGATTC TTAGACAGAA TGTGTGTGTG TGGGGGGGGG
  R
  GATAAGCGTT AATCATAATA TTAAATGTCT TTACTCCCCC AGTAGTTTAG GAAGTAGTTT
  ATTTAAAAAA AAAAAAGAAA GAAAGAAAGT GAAAACTGGT AAGATTGCCA TCACTGTATT
  ATTGCAACTT GGCTGTTTTG GTTGGTTGGT TTTTCAATAC AGGATTTCTC TGTGTAGCTT
  TGGCTGTCCT GGAATTAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6331870	mCV25100976_29479341	CRAMUS	CRAMUS_MOUSE	f	SNP		G	A
ss39416035	mCV25100976	ABI	CRAMUS_MOUSE	f	SNP		G	A
ss147943842	ENSMUSSNP3719258	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss325135670	CHEV_16_31985442	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4169792					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31804174 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	1142 bp distal
Gm15694	predicted gene 15694	1822 bp downstream
Gm49733	predicted gene, 49733	1475 bp downstream
Rr514592	regulatory region 514592	775 bp distal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates