rs4170037 SNP Detail

Summary

• ID
  rs4170037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31997238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC AGGCAGGAAA GGCTAAAACA
  R
  ATGTAACTTA AGGCTAGAAA TTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6332115	mCV24594463_29672234	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss39446539	mCV24594463	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss147945876	ENSMUSSNP2639536	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4170037					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31997238 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	1380 bp upstream
Rr370081	regulatory region 370081	1106 bp downstream
Rr370082	regulatory region 370082	914 bp downstream
Tssr137949	transcription start site region 137949	831 bp downstream
Tssr137950	transcription start site region 137950	745 bp downstream
Tssr137951	transcription start site region 137951	1356 bp upstream
Tssr137952	transcription start site region 137952	1374 bp upstream
Tssr137953	transcription start site region 137953	1418 bp upstream
Tssr137954	transcription start site region 137954	1434 bp upstream
Tssr140794	transcription start site region 140794	1466 bp upstream
Tssr140795	transcription start site region 140795	1159 bp downstream
Tssr140796	transcription start site region 140796	1176 bp downstream
Tssr140797	transcription start site region 140797	1194 bp downstream
Tssr140798	transcription start site region 140798	1255 bp downstream