rs4170039 SNP Detail

Summary

• ID
  rs4170039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31997319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG ACCATCATTT TGAAACTGCA
  R
  TCATTCCCAG TACCAAAGCC GGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6332117	mCV24594468_29672315	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss39422384	mCV24594468	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss147945886	ENSMUSSNP5408636	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4170039					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31997319 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	1299 bp upstream
Rr370081	regulatory region 370081	1187 bp downstream
Rr370082	regulatory region 370082	995 bp downstream
Rr514653	regulatory region 514653	753 bp distal
Tssr137949	transcription start site region 137949	912 bp downstream
Tssr137950	transcription start site region 137950	826 bp downstream
Tssr137951	transcription start site region 137951	1275 bp upstream
Tssr137952	transcription start site region 137952	1293 bp upstream
Tssr137953	transcription start site region 137953	1337 bp upstream
Tssr137954	transcription start site region 137954	1353 bp upstream
Tssr140794	transcription start site region 140794	1547 bp upstream
Tssr140795	transcription start site region 140795	1078 bp downstream
Tssr140796	transcription start site region 140796	1095 bp downstream
Tssr140797	transcription start site region 140797	1113 bp downstream
Tssr140798	transcription start site region 140798	1174 bp downstream