rs4170040 SNP Detail

Summary

• ID
  rs4170040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31997663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT CCTCTTAGAA AATGGTGCTG
  Y
  GGTGGCCAGT ATGGTAGAAG GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6332118	mCV24594473_29672659	CRAMUS	CRAMUS_MOUSE	f	SNP		C	T			T		C
ss39422015	mCV24594473	ABI	CRAMUS_MOUSE	f	SNP		C	T			T		C
ss48179555	NES12104024	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C		T	C	C	C	C	C	T
ss147945890	ENSMUSSNP6276932	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4170040					SNP	T	C	T	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48179555	NES12104024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31997663 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	955 bp upstream
Rr370081	regulatory region 370081	1531 bp downstream
Rr370082	regulatory region 370082	1339 bp downstream
Rr514653	regulatory region 514653	1097 bp distal
Tssr137949	transcription start site region 137949	1256 bp downstream
Tssr137950	transcription start site region 137950	1170 bp downstream
Tssr137951	transcription start site region 137951	931 bp upstream
Tssr137952	transcription start site region 137952	949 bp upstream
Tssr137953	transcription start site region 137953	993 bp upstream
Tssr137954	transcription start site region 137954	1009 bp upstream
Tssr140794	transcription start site region 140794	1891 bp upstream
Tssr140795	transcription start site region 140795	734 bp downstream
Tssr140796	transcription start site region 140796	751 bp downstream
Tssr140797	transcription start site region 140797	769 bp downstream
Tssr140798	transcription start site region 140798	830 bp downstream