rs4170041 SNP Detail

Summary

• ID
  rs4170041
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31997951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT CTAAAACTAC CCTATACTGT
  W
  CTATTTTATA CTTCTGTACT ATGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6332119	mCV24594474_29672947	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss39460564	mCV24594474	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss147945896	ENSMUSSNP4584289	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4170041					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31997951 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	667 bp upstream
Rr370081	regulatory region 370081	1819 bp downstream
Rr370082	regulatory region 370082	1627 bp downstream
Tssr137949	transcription start site region 137949	1544 bp downstream
Tssr137950	transcription start site region 137950	1458 bp downstream
Tssr137951	transcription start site region 137951	643 bp upstream
Tssr137952	transcription start site region 137952	661 bp upstream
Tssr137953	transcription start site region 137953	705 bp upstream
Tssr137954	transcription start site region 137954	721 bp upstream
Tssr140795	transcription start site region 140795	446 bp downstream
Tssr140796	transcription start site region 140796	463 bp downstream
Tssr140797	transcription start site region 140797	481 bp downstream
Tssr140798	transcription start site region 140798	542 bp downstream