rs4170042 SNP Detail

Summary

• ID
  rs4170042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31998725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TTGGAGGTTC AACAGGTGAG
  R
  CAATTTTTTT TTTAAAGATT TATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss6332120	mCV24594478_29673733	CRAMUS	CRAMUS_MOUSE	f	SNP	A	A	G
ss39445207	mCV24594478	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147945901	ENSMUSSNP728895	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs4170042					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31998725 () rs orientation: forward

Symbol	Name	Function Class
Bex6	brain expressed family member 6	within coordinates
Tssr137951	transcription start site region 137951	119 bp downstream
Tssr137952	transcription start site region 137952	72 bp downstream
Tssr137953	transcription start site region 137953	57 bp downstream
Tssr137954	transcription start site region 137954	50 bp downstream
Tssr140795	transcription start site region 140795	321 bp upstream
Tssr140796	transcription start site region 140796	299 bp upstream
Tssr140797	transcription start site region 140797	270 bp upstream
Tssr140798	transcription start site region 140798	219 bp upstream