rs4170131 SNP Detail

Summary

• ID
  rs4170131
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32090022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCGCACCCA GATTGGCTCC CCAGTGCCAA CATTAGATCT CACAATTATC TGTAACTCTA
  GTTCCCCTCT TTTTTTTTCC CCCTGTGGTT TTTTGTTTTT TTTTTTGTTT TGTTTTGTTT
  TTGAGACAGG GTTTCTCTGT GTAGCCCTGG CTGTCCTGGA ACTCACTCTG TAGACCAGGC
  TGGCCTTGAG CTCAGAAATC TGCCTGCCTC TGCCTCCCAA GTGCTGGGGT TAAAGAAGTG
  TGCCGCCACT GCCAGGCTAG TTCCCCTCTT CTGGCACATG GTGCACACAC TTATGTGCCC
  W
  CAGAACACTC AAATACAGCA AATAAATAAA ACTTTTAAAA TGAAAGTAAT ATCTCTATCA
  AATCTAACTG TAGAGTAGCA TATACATTTG TCCTATATAC ATCGTCCAGT ATAAGCAAAG
  TTGTCTGGTT GTGTGCCGCT CTGTGATAGC ATGGTCTGTT TCCAGAGGCA AATGTCACAG
  TGCGCGCCAG GACACCTGGG TTCACACCAT CGGTTCTTTG AAACTATATC TGGATGTTCA
  GGCTATTAAA AGCTTCATGG ACTGGGTGAC CTTCTGGGCA GTACTGAGAT GGGATGTTCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6332209	mCV23944867_29756185	CRAMUS	CRAMUS_MOUSE	f	SNP	T	A	A	A	A
ss39470981	mCV23944867	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4170131					SNP	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32090022 () rs orientation: forward

Symbol	Name	Function Class
Gm60870	predicted gene, 60870	within coordinates
Rr514670	regulatory region 514670	94 bp proximal
Rr514671	regulatory region 514671	275 bp proximal
Smco1	single-pass membrane protein with coiled-coil domains 1	276 bp upstream
Tssr137957	transcription start site region 137957	269 bp upstream
Tssr137958	transcription start site region 137958	326 bp upstream
Tssr137959	transcription start site region 137959	341 bp upstream