rs4170179 SNP Detail

Summary

• ID
  rs4170179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32149345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGCGCACGC CTTTAATCCC AGCACCAGGG AGGCAGAGGC AGGCGGATTT CTGAGTTCGA
  GGCCACCCTG GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTACACAGA GAAACCCTAT
  CTCAAAAAAA AAAAAAAAAA AAAAGAAAGA AAGAAAGAAA GAAAAAAAAA AAGAAACTGG
  TCAAGAACTG AAAGTGACTA TTGAGTGCTC AGCCCTAACT GTGGCATCTA TGTTAACCTC
  ATCAAGGCTC AGGGAAAGAC AAGGAGAGGG CAGAGAGAAC ATAAGAGTCG GAGGATGGGA
  R
  AGGGGCTGTC TCTAGGACAT GGCAAGGCTG CTACACTCAA GAACTCACTG CAGTTACGGT
  TACCCACCCA AGATCAAGCT GGTAAGAGGC AGCCATCCAG GAGGTAGCAT TCATGGATTA
  GGCTCAATGG AGTTGATGTG GGGGTGGGGG CACGTGAAAG TGGGAGGGAT GTGTAAGAAT
  GTCCAGGGGA AAATGAGTAA GGAGGTAGAG GTGGATATGA TCAAGATACC CGATAAACAT
  ATATGAAACC ATCAAAGTAT AAATAAAAAC TATCCTAAAT AACTGAAATT GGTCAGGATT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss6332257	mCV25150782_29815010	CRAMUS	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss39446326	mCV25150782	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss147947573	ENSMUSSNP286797	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs4170179					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32149345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8188	CpG island 8188	1492 bp proximal
Gm59802	predicted gene, 59802	1328 bp downstream
Rr404777	regulatory region 404777	1486 bp upstream
Rr514682	regulatory region 514682	1240 bp proximal
Tssr137967	transcription start site region 137967	1711 bp upstream
Ubxn7	UBX domain protein 7	1730 bp upstream