rs4170180 SNP Detail

Summary

• ID
  rs4170180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32149891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCA CCGCCCATAG GCGGGCCCAC
  Y
  TTCACTGGTC ACTCACTGAG AAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss6332258	mCV25150783_29815556	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss39485968	mCV25150783	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss147947580	ENSMUSSNP2836257	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss325136310	CHEV_16_32331159	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs4170180					SNP	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32149891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8188	CpG island 8188	946 bp proximal
Gm59802	predicted gene, 59802	782 bp downstream
Rr404777	regulatory region 404777	940 bp upstream
Rr514682	regulatory region 514682	694 bp proximal
Rr514683	regulatory region 514683	1854 bp proximal
Tssr137967	transcription start site region 137967	1165 bp upstream
Ubxn7	UBX domain protein 7	1184 bp upstream