rs4170261 SNP Detail

Summary

• ID
  rs4170261
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32249474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGAG CCGGCGGGCT CGAAGTCCTC
  S
  GGGAGGTCGG ACATCGGAGC CCCAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6332341	mCV25151303_29914833	CRAMUS	CRAMUS_MOUSE	f	SNP		C	G
ss39455891	mCV25151303	ABI	CRAMUS_MOUSE	f	SNP		C	G
ss147948419	ENSMUSSNP3823993	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325136471	CHEV_16_32430742	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4170261					SNP	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32249474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	within coordinates
Dynlt2b	dynein light chain Tctex-type 2B	1557 bp downstream
Gm53948	predicted gene, 53948	1392 bp upstream
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	265 bp upstream
Rr404779	regulatory region 404779	99 bp upstream
Rr514694	regulatory region 514694	1249 bp distal
Rr514695	regulatory region 514695	within coordinates
Rr514696	regulatory region 514696	13 bp proximal
Rr514697	regulatory region 514697	72 bp proximal
Rr514698	regulatory region 514698	604 bp proximal
Tssr137979	transcription start site region 137979	38 bp downstream
Tssr137980	transcription start site region 137980	239 bp upstream
Tssr137981	transcription start site region 137981	329 bp upstream
Tssr137982	transcription start site region 137982	367 bp upstream
Tssr137983	transcription start site region 137983	387 bp upstream
Tssr137984	transcription start site region 137984	436 bp upstream
Tssr137985	transcription start site region 137985	569 bp upstream
Tssr137986	transcription start site region 137986	634 bp upstream
Tssr140804	transcription start site region 140804	422 bp downstream