rs4170325 SNP Detail

Summary

• ID
  rs4170325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32304871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC ACCAGGCCAG CCATCCTCTC
  Y
  GTTGACCAGA TGGGAGCCAG CTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss6332407	mCV23210784_29969965	CRAMUS	CRAMUS_MOUSE	f	SNP	T	C	C						C
ss39452359	mCV23210784	ABI	CRAMUS_MOUSE	f	SNP	T	C	C						C
ss63736639	NES17074309	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	T	C	C	T		C	C		T
ss147948847	ENSMUSSNP972576	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss325136565	CHEV_16_32486139	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs4170325					SNP	T	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63736639	NES17074309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32304871 () rs orientation: forward

Symbol	Name	Function Class
Rr514710	regulatory region 514710	500 bp distal
Rr514711	regulatory region 514711	1079 bp proximal
Rr514712	regulatory region 514712	1816 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1543 bp downstream
Tssr4847	transcription start site region 4847	1562 bp downstream
Tssr140806	transcription start site region 140806	115 bp downstream
Tssr140807	transcription start site region 140807	1099 bp downstream
Tssr140808	transcription start site region 140808	1115 bp downstream
Tssr140809	transcription start site region 140809	1142 bp downstream
Tssr140810	transcription start site region 140810	1172 bp downstream
Tssr140811	transcription start site region 140811	1590 bp downstream
Tssr140812	transcription start site region 140812	1614 bp downstream
Tssr140813	transcription start site region 140813	1756 bp downstream
Tssr140814	transcription start site region 140814	1820 bp downstream
Tssr140815	transcription start site region 140815	1844 bp downstream