rs4170326 SNP Detail

Summary

• ID
  rs4170326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAG CGCTTAGTCC ATCTCAGAGA
  Y
  TCCTGAATGC AAGGAGATAG TCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6332408	mCV23210785_29970229	CRAMUS	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss39475370	mCV23210785	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss63736636	NES17074310	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	C		C	T	T	C		C
ss147948852	ENSMUSSNP2871108	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss325136566	CHEV_16_32486403	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4170326					SNP	C	T	T	T	T	T	T	C	C	T	T	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63736636	NES17074310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305135 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1742 bp upstream
Rr514710	regulatory region 514710	764 bp distal
Rr514711	regulatory region 514711	815 bp proximal
Rr514712	regulatory region 514712	1552 bp proximal
Rr514713	regulatory region 514713	1753 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1279 bp downstream
Tssr4847	transcription start site region 4847	1298 bp downstream
Tssr137989	transcription start site region 137989	1776 bp upstream
Tssr140806	transcription start site region 140806	142 bp upstream
Tssr140807	transcription start site region 140807	835 bp downstream
Tssr140808	transcription start site region 140808	851 bp downstream
Tssr140809	transcription start site region 140809	878 bp downstream
Tssr140810	transcription start site region 140810	908 bp downstream
Tssr140811	transcription start site region 140811	1326 bp downstream
Tssr140812	transcription start site region 140812	1350 bp downstream
Tssr140813	transcription start site region 140813	1492 bp downstream
Tssr140814	transcription start site region 140814	1556 bp downstream
Tssr140815	transcription start site region 140815	1580 bp downstream