rs4170327 SNP Detail

Summary

• ID
  rs4170327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACAGGCAC GGTAACGCAG GCTTGTAAGC CCAGCACTGG AGAGGGAGGC TGAGGCAGGA
  GGATCTTAAT GCAAGGCCAG CTTTAACTGT ACAATGACAT GGTAAGACTG TCAGAAAAAA
  GAAAAAAAGA AAGAAAGGAA AAAGAAAAAG TAAACTGGAC TGTGGTAACA AACAGCTTTG
  GCTCCGGCAC TCGGGAGGCA GAGGCAGATG GATCTCTGAA TCTGAGGCCA GCCTGATCTA
  CAGAGTAAGT TTCAGGATAG TCCAGGTTAC ATCAAAAAAG AAAGGAAGAA AGGAGGAAGG
  R
  AGGAAGGAAG GAAGGAAGGA AGGAAGGGAG GAAGGGAGAA AGGGAGAAAG GGAGAAAGGG
  AGAAAGGGAG AAAGGGAGAA AGGGAGAAAG GGAGAAAGAA AGGGATGGAG GGAGGGAAAG
  AGGAAGGAAG GGAGGGAGGA AGGAAGGAAG GAAGGAAGGA AGGAAGGAAG GAAGGAAGGA
  AGAAAGGAAG GAAGAGAAAA CAAGAAAAGA AAAGGTAATC CCGTAGTATC AAGATGGGCC
  TGCCCTCTGT TTGTCGGGGC TTCTGTGCTG TCAAGGATCG CCTCCTGCAA CCCTAACCTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss6332409	mCV23210795_29970677	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G
ss39452598	mCV23210795	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs4170327					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305583 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1294 bp upstream
Rr514710	regulatory region 514710	1212 bp distal
Rr514711	regulatory region 514711	367 bp proximal
Rr514712	regulatory region 514712	1104 bp proximal
Rr514713	regulatory region 514713	1305 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	831 bp downstream
Tssr4847	transcription start site region 4847	850 bp downstream
Tssr137989	transcription start site region 137989	1328 bp upstream
Tssr140806	transcription start site region 140806	590 bp upstream
Tssr140807	transcription start site region 140807	387 bp downstream
Tssr140808	transcription start site region 140808	403 bp downstream
Tssr140809	transcription start site region 140809	430 bp downstream
Tssr140810	transcription start site region 140810	460 bp downstream
Tssr140811	transcription start site region 140811	878 bp downstream
Tssr140812	transcription start site region 140812	902 bp downstream
Tssr140813	transcription start site region 140813	1044 bp downstream
Tssr140814	transcription start site region 140814	1108 bp downstream
Tssr140815	transcription start site region 140815	1132 bp downstream