rs4170328 SNP Detail

Summary

• ID
  rs4170328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACGCAGGC TTGTAAGCCC AGCACTGGAG AGGGAGGCTG AGGCAGGAGG ATCTTAATGC
  AAGGCCAGCT TTAACTGTAC AATGACATGG TAAGACTGTC AGAAAAAAGA AAAAAAGAAA
  GAAAGGAAAA AGAAAAAGTA AACTGGACTG TGGTAACAAA CAGCTTTGGC TCCGGCACTC
  GGGAGGCAGA GGCAGATGGA TCTCTGAATC TGAGGCCAGC CTGATCTACA GAGTAAGTTT
  CAGGATAGTC CAGGTTACAT CAAAAAAGAA AGGAAGAAAG GAGGAAGGGA GGAAGGAAGG
  R
  AGGAAGGAAG GAAGGGAGGA AGGGAGAAAG GGAGAAAGGG AGAAAGGGAG AAAGGGAGAA
  AGGGAGAAAG GGAGAAAGGG AGAAAGAAAG GGATGGAGGG AGGGAAAGAG GAAGGAAGGG
  AGGGAGGAAG GAAGGAAGGA AGGAAGGAAG GAAGGAAGGA AGGAAGGAAG AAAGGAAGGA
  AGAGAAAACA AGAAAAGAAA AGGTAATCCC GTAGTATCAA GATGGGCCTG CCCTCTGTTT
  GTCGGGGCTT CTGTGCTGTC AAGGATCGCC TCCTGCAACC CTAACCTCTG TAATCTTTCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss6332410	mCV23210796_29970689	CRAMUS	CRAMUS_MOUSE	f	SNP	A	G
ss39466767	mCV23210796	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs4170328					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305595 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1282 bp upstream
Rr514710	regulatory region 514710	1224 bp distal
Rr514711	regulatory region 514711	355 bp proximal
Rr514712	regulatory region 514712	1092 bp proximal
Rr514713	regulatory region 514713	1293 bp proximal
Rr514714	regulatory region 514714	1994 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	819 bp downstream
Tssr4847	transcription start site region 4847	838 bp downstream
Tssr137989	transcription start site region 137989	1316 bp upstream
Tssr140806	transcription start site region 140806	602 bp upstream
Tssr140807	transcription start site region 140807	375 bp downstream
Tssr140808	transcription start site region 140808	391 bp downstream
Tssr140809	transcription start site region 140809	418 bp downstream
Tssr140810	transcription start site region 140810	448 bp downstream
Tssr140811	transcription start site region 140811	866 bp downstream
Tssr140812	transcription start site region 140812	890 bp downstream
Tssr140813	transcription start site region 140813	1032 bp downstream
Tssr140814	transcription start site region 140814	1096 bp downstream
Tssr140815	transcription start site region 140815	1120 bp downstream