rs4170415 SNP Detail

Summary

• ID
  rs4170415
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32395833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACTTATTC ACTTTTCATC CCAATCACTA CTCCTCCTAG TCACCCCTTC CACAATCCTT
  CCCCCACCCT CTCCCCTTCT CCTCTGAGGG AGTGGAGGCC CCTCTGGGTA CCCCCCACCC
  TGGCACTTCA GGTCTCTGTG AGCTAGGTGC TTCCTTTCCC ACAGAAGCCA GACAAGGCAG
  CCCAGCTAGA AAAACATATC CCATATACAG GCACAGCTTT TGGGATAGCC CCTGCTCCAG
  TTGCTCAGGA CCCACATGAA GACCAAGCTG CACATCTGCT ACATATGTGA GGGAGGCCTA
  K
  GTCCAGCCTG TGCATGCTCT TTGGTTGGTG GTTCAGACTC TGAGAACCCC AACTCTGGTT
  GGTTAGTTAG TTAGTTAGTT GACTCTGTAG GTCTTCCTGT GGAGTTCCTA TTCCCTTTGG
  GGGTCTGCAA TCCTTTCTCC TATAAGGGTC TCCAAGCTCC ATCCACTGTT TGGCTATAGG
  TGCCCATATC TGAGTCAGCT GCTGGGTGGA GGCTTTGAGA AGACAACTTG CTCCCATCTG
  CAAGCATAAC AGAGTAACTC TATCATAATA GTGTTAGGGA TTGGTGCCCC ATGGAATGGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss6332499	mCV24594869_30063959	CRAMUS	CRAMUS_MOUSE	f	SNP	T		G
ss39459282	mCV24594869	ABI	CRAMUS_MOUSE	f	SNP	T		G
ss147950221	ENSMUSSNP3490307	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs4170415					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32395833 () rs orientation: forward

Symbol	Name	Function Class
Gm60756	predicted gene, 60756	1041 bp upstream
Rr317723	regulatory region 317723	1168 bp proximal
Rr391588	regulatory region 391588	1370 bp upstream