rs4170821 SNP Detail

Summary

• ID
  rs4170821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32687116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TTAAATATCT GACCCAGTCC
  R
  CTCCACATGA AACAGTACAG GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss6332906	mCV25152341_30345928	CRAMUS	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss39470927	mCV25152341	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss325137901	CHEV_16_32866832	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs4170821					SNP	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32687116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	1140 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140826	transcription start site region 140826	385 bp upstream
Tssr140827	transcription start site region 140827	764 bp downstream
Tssr140828	transcription start site region 140828	1525 bp downstream
Tssr140829	transcription start site region 140829	1540 bp downstream
Tssr140830	transcription start site region 140830	1579 bp downstream