rs4170823 SNP Detail

Summary

• ID
  rs4170823
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32687322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT CATAGACCTC GGTCAAGAAC
  K
  CCAAGCTCTA CTAATTCAGT AGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss6332908	mCV25152349_30346134	CRAMUS	CRAMUS_MOUSE	f	SNP		T	T		G		T
ss39427748	mCV25152349	ABI	CRAMUS_MOUSE	f	SNP		T	T		G		T
ss48181780	NES12109133	PERLEGEN	MM_PANEL2	f	SNP	G			T		G	T	T		G	T	G		G
ss147954615	ENSMUSSNP1477533	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss325137903	CHEV_16_32867038	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs4170823					SNP	G	T	T	T	G	G	T	T	T	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48181780	NES12109133	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32687322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	934 bp proximal
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140826	transcription start site region 140826	591 bp upstream
Tssr140827	transcription start site region 140827	558 bp downstream
Tssr140828	transcription start site region 140828	1319 bp downstream
Tssr140829	transcription start site region 140829	1334 bp downstream
Tssr140830	transcription start site region 140830	1373 bp downstream