rs4170824 SNP Detail

Summary

• ID
  rs4170824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32688388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACA GGATGCCGCG CCCCGCACTG
  Y
  GTGTCATGCC AGCCAAGTCT CCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss6332909	mCV25152350_30347216	CRAMUS	CRAMUS_MOUSE	f	SNP	C	T
ss39438156	mCV25152350	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss325137912	CHEV_16_32868104	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs4170824					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32688388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	within coordinates
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140826	transcription start site region 140826	1657 bp upstream
Tssr140827	transcription start site region 140827	501 bp upstream
Tssr140828	transcription start site region 140828	253 bp downstream
Tssr140829	transcription start site region 140829	268 bp downstream
Tssr140830	transcription start site region 140830	307 bp downstream
Tssr140831	transcription start site region 140831	1940 bp downstream